from ._utils import DataSet
[docs]def imc():
"""Pre-processed subset IMC dataset from *Jackson, H.W., Fischer, J.R., Zanotelli, V.R.T. et al. The single-cell pathology landscape of breast cancer.* `Nature <https://doi.org/10.1038/s41586-019-1876-x>`_
"""
return DataSet(
name='imc',
url='https://figshare.com/ndownloader/files/31750769',
doc_header='Pre-processed subset IMC dataset from `Jackson et al '
)
[docs]def mibi():
"""
Processed data from *A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging.* `Cell <https://doi.org/10.1016/j.cell.2018.08.039>`_.
Normalised expression values of segmented cells and cell masks from `here <https://www.angelolab.com/mibi-data>`_ and tiff stacks from `here <https://mibi-share.ionpath.com/tracker/imageset/>`_
"""
return DataSet(
name='mibi',
url='https://figshare.com/ndownloader/files/34148859',
doc_header='Processed data from https://www.angelolab.com/mibi-data and https://mibi-share.ionpath.com/tracker/imageset'
)
mibi_pop = DataSet(
name='mibi',
url=None,
doc_header='Processed and populated data (graphs, metrics) from https://www.angelolab.com/mibi-data and https://mibi-share.ionpath.com/tracker/imageset'
)