ATHENA - Analysis of Tumor Heterogeneity in Spatial Omics Measurements

General

• Installation

Gallery

• Overview of ATHENA
  • Main components
  • Further Resources
• Methodology
• Tutorial
  • Import needed packages
  • Load IMC data into a SpatialOmics object
  • Explore SpatialOmics object
  • Visualize raw images and masks
  • Visualize single-cell data
  • Graph construction
  • Heterogeneity quantification
• SpatialOmics Tutorial
  • Load from Raw Data
  • Load Pre-processed SpatialOmics
  • Load Pre-processed AnnData-Datasets

API

• API Overview
  • Methods
  • Datasets